Selected Publications for Paul W. Sternberg

Yu H, Seah A, Herman MA, Ferguson EL, Horvitz HR, Sternberg PW. (2009). Wnt and EGF pathways act together to induce C. elegans male hook development. Dev Biol. Dev Biol. 327(2):419-432.

Baugh, L. R., DeModena, J. and Sternberg, P. W. (2009). RNA Pol II Accumulates at Promoters of Growth Genes During Developmental Arrest. Science 324(5923):92-94.

Giurumescu, C. A., Sternberg, P. W. and Asthagiri, A. R. (2009). Predicting phenotypic diversity and the underlying quantitative molecular transitions. PLoS Comput. Biol. 5(4): e1000354.

Pungaliya, C., Srinivasan, J., Fox, B. W., Malik, R. U., Ludewig, A. H., Sternberg, P. W., and Schroeder, F. C. (2009) A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans., Proc Natl Acad Sci U S A In press

Kuntz SG, Schwarz EM, Demodena JA, De Buysscher T, Trout D, Shizuya H, Sternberg PW, Wold BJ. (2008). Multigenome DNA sequence conservation identifies Hox cis-regulatory elements. Genome Research 18: 1955-1968.

Ririe TO, Fernandes JS, Sternberg PW. The Caenorhabditis elegans vulva: a post-embryonic gene regulatory network controlling organogenesis. Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20095-9.

Srinivasan J, Durak O, Sternberg PW. Evolution of a polymodal sensory response network. BMC Biol. 2008 Dec 15;6:52.

Hallem, E. A. and Sternberg, P. W. (2008). Acute carbon dioxide avoidance in C. elegans. Proc. Natl. Acad. Sci, USA, 105: 8038-8043.

Green, J. L., Inoue, T., and Sternberg, P.W. (2008). Opposing Wnt pathways orient cell polarity during organogenesis. Cell 134: 646-656.

Srinivasan, J., Kaplan, F., Ajredini, R., Zachariah, C., Alborn, H., Teal, P., Malik, R. U., Edison, A. E., Sternberg, P. W., and Schroeder, F. C. (2008). A blend of small molecules regulates both mating and development in Caenorhabditis elegans. Nature 454: 1115-1118.

Van Buskirk, C. and Sternberg, P. W. (2007). EGF signaling induces behavioral quiescence in C. elegans. Nature Neuroscience 10: 1300-1307.

Green, J. L., Inoue, T. and Sternberg, P. W. (2007). The C. elegans ROR RTK, CAM-1, non-autonomously inhibits the Wnt pathway. Development 134: 4053-4062.

Campbell B.E., Nagaraj S.H., Hu M., Zhong W., Sternberg P.W., Ong E.K., Loukas A., Ranganathan S., Beveridge I., McInnes R..L, Hutchinson G.W., Gasser R.B. (2008). Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans. Int J Parasitol., 38: 65-83.

The Gene Ontology Consortium (2008). The Gene Ontology project in 2008. Nucleic Acids Research doi: 10.1093/nar/gkm883.

Rogers A, Antoshechkin I, Bieri T, Blasiar D, Bastiani C, Canaran P, Chan J, Chen WJ, Davis P, Fernandes J, Fiedler TJ, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Ozersky P, Petcherski A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Yook K, Durbin R, Stein LD, Spieth J, Sternberg PW. (2008). Nucleic Acids Res. 36(Database issue): D612-617.

Bai, X., Grewal, P. S., Hogenhout, S. A., Adams, B. J., Ciche, T. A. Gaughler, R. and Sternberg, P. W. (2007). Expressed sequence tag analysis of gene representation in insect parasitic nematode Heterorhabditis bacteriophora. Journal of Parasitology 93: 1343-1349.

Huang,C. Q., Gasser, R. B., Cantacessi, C., Nisbet, A. J., Zhong, W., Sternberg, P. W., Loukas, A., Mulvenna, J., Lin, R. Q., Chen, N., Zhu, X. Q. (2008). Genomic-bioinformatic analysis of transcripts enriched in the third-stage larva of the parasitic nematode Acaris suum. PLoS Neglected Tropical Diseases 2(6): e246.

Cui, X., Lee, L. M., Heng, X., Zhong, Z., Sternberg, P. W., Psaltis, D., and Yang, C. (2008). Imaging microorganisms with a high resolution on-chip optofluidic microscope. Proc. Natl. Acad. Sci., USA, 105(31):10670-10675.

Gardner, D., Akil, H., Ascoli, G. A., Bowden, D. M., Bug, W., Donohue, D. E., Goldberg, D. H., Grafstein, B., Grethe, J. S., Gupta, A., Halavi, M., Kennedy, D. N., Marenco, L., Martone, M. E. Miller, P., Müller, H.-M., Robert, A., Shephard, G. M., Sternberg, P. W., Van Essen, D. C. and Williams, R. W. (2008). The Neuroscience Information Framework: a data and knowledge environment for Neuroscience. Journal of Neuroinformatics, in press.

Hu, M., LeRonde-LeBlanc, N., Sternberg, P. W. and Gasser, R. B. (2008). Tv-RIO1 - an atypical protein kinase from the parasitic nematode Trichostrongylus vitrinus. Parasites & Vectors, 1:34 doi:10.1186/1756-3305-1-34

Kee, Y., Hwang, B.J., Sternberg, P.W., and Bronner-Fraser, M. (2007). Evolutionary conservation of cell migration genes: from nematode neurons to vertebrate neural crest. Genes & Development 21 :391-396.

Zhong, W. and Sternberg, P.W. (2006). Genome-wide prediction of C. elegans genetic interactions. Science 311: 1481-1484.

Heng, X., Erickson, D., Baugh, L.R., Yaqoob, Z., Sternberg, P.W., Psaltis, D., and Yang, C. (2006). Optofluidic microscopy – a method for implementing a high resolution optical microscope on a chip. Lab Chip DOI:10.1039/b604676b.

Feng, Z., Li, W., Ward, A., Piggott, B.J., Larkspur, E.R., Sternberg, P.W., and Xu, X.Z.S. (2006). A C. elegans model of nicotine-dependent behavior: regulation by TRP-family channels. Cell 127: 621-633.

Baugh, L. R., and Sternberg, P. W. (2006). DAF-16/FOXO regulates transcription of cki-1/ Cip/Kip and repression of lin-4 during C. elegans L1 arrest. Current Biology 16: 780-785.

Cui, M., Chen, J., Myers, T. R., Hwang, B. J., Sternberg, P. W., Greenwald, I., and Han, M. (2006). SynMuv genes redundantly inhibit lin-3/EGF expression to prevent inappropriate vulval induction in C. elegans. Developmental Cell 10: 667-672.

Karbowski, J., Cronin, C.J., Seah, A., Mendel, J.E., Sternberg, P.W., and Cleary, D. (2006). Conservation rules, their breakdown, and optimality in Caenorhabditis sinusoidal locomotion. J. Theoretical Biology 2006 May 5.

Schindelman, G., Whittaker, A.J., Thum, J.Y., Gharib, S., Sternberg, P.W. (2006) Initiation of male sperm-transfer behavior in Caenorhabditis elegans requires input from the ventral nerve cord. BMC Biol. Aug 15: 4: 26.

Chen, D., Muller, H.M., Sternberg, P.W. (2006). Automatic document classification of biological literature. BMC Bioinformatics 7: 370.

Giurumescu, C., Sternberg, P. and Asthagiri, A. (2006). Intercellular coupling amplifies fate segregation during C. elegans vulval development. Proc. Natl. Acad. Sci, USA 103: 1331-1336.

Sherwood, D., Butler, J., Kramer, J. and Sternberg, P. W. (2005) FOS-1 promotes basement membrane removal during anchor cell invasion in C. elegans. Cell 121: 951-962.

Inoue, T., Oz, H. S., Wiland, D., Gharib, S., Deshpande, R., Hill, R. J., Katz, W. S., and Sternberg, P. W. (2004). C. elegans LIN-18 Is a Ryk Ortholog and Functions in Parallel to LIN-17/Frizzled in Wnt Signaling. Cell 118: 795-806.

Mueller, H.-M., Kenny, E., and Sternberg, P. W. (2004). Textpresso: an ontology-based information retrieval and extraction system for C. elegans literature. PLoS Biol 2(10): e309.

Hwang, B. J., Mueller, H.-M., and Sternberg, P. W. (2004). Genome annotation by high-throughput 5'-RNA end determination. Proc. Natl. Acad. Sci. USA 101: 1650-1655.

Sommer, R. J. and Sternberg, P. W. (1994). Changes of induction and competence during the evolution of vulva development in nematodes. Science 265: 114-118.

Liu, K. and Sternberg, P. W. (1995). Sensory regulation of male mating behavior in Caenorhabditis elegans. Neuron 14: 79-89.